CMake Changes

This is the changes made by Patrick Plenefisch converting the native
code to use CMake and the CMake Maven Plugin, as opposed to the
native Maven plugin. This is to allow for compatibility with newer
versions of the GCC toolchain. All the cpp sources were moved from
maven style directories to cpp style directories for CMake.

Change-Id: I67f5e3608948f37c83b0990d232105a3784f8593

networktables/cpp/lib/Athena/networktables2/stream/FDIOStream.cpp

@@ -0,0 +1,86 @@
+/*
+ * FDIOStream.cpp
+ *
+ *  Created on: Sep 27, 2012
+ *      Author: Mitchell Wills
+ */
+
+#include "networktables2/stream/FDIOStream.h"
+#include "networktables2/util/IOException.h"
+#include "networktables2/util/EOFException.h"
+
+#include <errno.h>
+#include <stdlib.h>
+#ifdef _WRS_KERNEL
+#include <iolib.h>
+#else
+#include <unistd.h>
+#endif
+#include <stdio.h>
+
+
+FDIOStream::FDIOStream(int _fd){
+  fd = _fd;
+  //	f = fdopen(_fd, "rbwb");
+  //	if(f==NULL)
+  //		throw IOException("Could not open stream from file descriptor", errno);
+}
+FDIOStream::~FDIOStream(){
+	close();
+}
+
+int FDIOStream::read(void* ptr, int numbytes){
+	if(numbytes==0)
+		return 0;
+	char* bufferPointer = (char*)ptr;
+	int totalRead = 0;
+
+	struct timeval timeout;
+	fd_set fdSet;
+	
+	while (totalRead < numbytes) {
+		FD_ZERO(&fdSet);
+		FD_SET(fd, &fdSet);
+		timeout.tv_sec = 1;
+		timeout.tv_usec = 0;
+		int select_result = select(FD_SETSIZE, &fdSet, NULL, NULL, &timeout);
+		if ( select_result < 0)
+		  throw IOException("Select returned an error on read");
+
+		int numRead = 0;
+		if (FD_ISSET(fd, &fdSet)) {
+		  numRead = ::read(fd, bufferPointer, numbytes-totalRead);
+
+		  if(numRead == 0){
+		    throw EOFException();
+		  }
+		  else if (numRead < 0) {
+		    perror("read error: ");
+		    fflush(stderr);
+		    throw IOException("Error on FDIO read");
+		  }
+		  bufferPointer += numRead;
+		  totalRead += numRead;
+		}
+	}
+	return totalRead;
+}
+int FDIOStream::write(const void* ptr, int numbytes){
+  int numWrote = ::write(fd, (char*)ptr, numbytes);//TODO: this is bad
+  //int numWrote = fwrite(ptr, 1, numbytes, f);
+  if(numWrote==numbytes)
+    return numWrote;
+  perror("write error: ");
+  fflush(stderr);
+  throw IOException("Could not write all bytes to fd stream");
+	
+}
+void FDIOStream::flush(){
+  //if(fflush(f)==EOF)
+  //  throw EOFException();
+}
+void FDIOStream::close(){
+  //fclose(f);//ignore any errors closing
+  ::close(fd);
+}
+