[hal,wpilib] Fix TimedRobot notifier race (#8445)

It was possible for the alarm to fire between the set alarm and ack,
resulting in a hang on next wait. It's not possible to ack before set
alarm due to a race in sim step timing, so the fix is to provide an
atomic ack and set alarm; the easiest way to implement this in the API
was to change ack to optionally also set the alarm again.

wpilibj/src/main/java/org/wpilib/system/Notifier.java

@@ -95,7 +95,7 @@ public class Notifier implements AutoCloseable {
                 }
 
                 // Acknowledge the alarm
-                NotifierJNI.acknowledgeNotifierAlarm(notifier);
+                NotifierJNI.acknowledgeNotifierAlarm(notifier, false, 0, 0, false);
               }
             });
     m_thread.setName("Notifier");