Modules aren't used anymore in wpilibc and wpilibj, so the hal functions
that references them and and JNI bindings for these functions have been
pulled out.
Both Counter classes were also modified because they still referenced
modules.
Change-Id: Ic01feb145a4ed5f08cd55f140867c721f5ee7b10
This is the changes made by Patrick Plenefisch converting the native
code to use CMake and the CMake Maven Plugin, as opposed to the
native Maven plugin. This is to allow for compatibility with newer
versions of the GCC toolchain. All the cpp sources were moved from
maven style directories to cpp style directories for CMake.
Change-Id: I67f5e3608948f37c83b0990d232105a3784f8593
