Commands v3 had a few changes due to the upgrade:
- Java 24 removed the Pinned: MONITOR IllegalStateException when
yielding in a synchronized block, so we no longer need to special case
for it
- Lambda method name generation was tweaked, requiring tests to be
updated
- Bazel java_rules needed to be bumped to support Java 25
Closes#8425
libprotobuf is a very annoying dependency to deal with, and with the switch to nanopb for generated C++ code, libprotobuf is only used for dynamic decode in the GUI apps. libprotobuf has been swapped out with upb, a much smaller C-based library that supports reflection and can therefore do dynamic decode. This means we can remove the libprotobuf dependency and stop dealing with build issues because of it.
